python中kmeans聚类实现代码

#encoding:utf-8 ''''' Created on 2015年9月21日 @author: ZHOUMEIXU204 '''   path=u"D://Users//zhoumeixu204//Desktop//python语言机器学习//机器学习实战代码  python//机器学习实战代码//machinelearninginaction//Ch10//" import numpy as np def loadDataSet(fileName): #读取数据   dataMat=[]   fr=open(fileName)   for line in fr.readlines():     curLine=line.strip().split('/t')     fltLine=map(float,curLine)     dataMat.append(fltLine)   return dataMat def distEclud(vecA,vecB):  #计算距离   return np.sqrt(np.sum(np.power(vecA-vecB,2))) def randCent(dataSet,k):   #构建镞质心   n=np.shape(dataSet)[1]   centroids=np.mat(np.zeros((k,n)))   for j in range(n):     minJ=np.min(dataSet[:,j])     rangeJ=float(np.max(dataSet[:,j])-minJ)     centroids[:,j]=minJ+rangeJ*np.random.rand(k,1)   return centroids dataMat=np.mat(loadDataSet(path+'testSet.txt')) print(dataMat[:,0])   # 所有数都比-inf大 # 所有数都比+inf小 def kMeans(dataSet,k,distMeas=distEclud,createCent=randCent):   m=np.shape(dataSet)[0]   clusterAssment=np.mat(np.zeros((m,2)))   centroids=createCent(dataSet,k)   clusterChanged=True   while clusterChanged:     clusterChanged=False     for i in range(m):       minDist=np.inf;minIndex=-1 #np.inf表示无穷大       for j in range(k):         distJI=distMeas(centroids[j,:],dataSet[i,:])         if distJI           minDist=distJI;minIndex=j       if clusterAssment[i,0]!=minIndex:clusterChanged=True       clusterAssment[i,:]=minIndex,minDist**2     print centroids     for cent in range(k):       ptsInClust=dataSet[np.nonzero(clusterAssment[:,0].A==cent)[0]] #[0]这里取0是指去除坐标索引值，结果会有两个       #np.nonzero函数，寻找非0元素的下标 nz=np.nonzero([1,2,3,0,0,4,0])结果为0,1,2       centroids[cent,:]=np.mean(ptsInClust,axis=0)        return centroids,clusterAssment myCentroids,clustAssing=kMeans(dataMat,4)  print(myCentroids,clustAssing)     #二分均值聚类(bisecting k-means) def  biKmeans(dataSet,k,distMeas=distEclud):   m=np.shape(dataSet)[0]   clusterAssment=np.mat(np.zeros((m,2)))   centroid0=np.mean(dataSet,axis=0).tolist()[0]   centList=[centroid0]   for j in range(m):     clusterAssment[j,1]=distMeas(np.mat(centroid0),dataSet[j,:])**2   while (len(centList)     lowestSSE=np.Inf     for i in range(len(centList)):       ptsInCurrCluster=dataSet[np.nonzero(clusterAssment[:,0].A==i)[0],:]       centroidMat,splitClusAss=kMeans(ptsInCurrCluster,2,distMeas)       sseSplit=np.sum(splitClusAss[:,1])       sseNotSplit=np.sum(clusterAssment[np.nonzero(clusterAssment[:,0].A!=i)[0],1])       print "sseSplit, and notSplit:",sseSplit,sseNotSplit       if (sseSplit+sseNotSplit)         bestCenToSplit=i         bestNewCents=centroidMat         bestClustAss=splitClusAss.copy()         lowestSSE=sseSplit+sseNotSplit     bestClustAss[np.nonzero(bestClustAss[:,0].A==1)[0],0]=len(centList)     bestClustAss[np.nonzero(bestClustAss[:,0].A==0)[0],0]=bestCenToSplit     print "the bestCentToSplit is:",bestCenToSplit     print 'the len of bestClustAss is:',len(bestClustAss)     centList[bestCenToSplit]=bestNewCents[0,:]     centList.append(bestNewCents[1,:])     clusterAssment[np.nonzero(clusterAssment[:,0].A==bestCenToSplit)[0],:]=bestClustAss   return centList,clusterAssment print(u"二分聚类分析结果开始") dataMat3=np.mat(loadDataSet(path+'testSet2.txt')) centList,myNewAssments=biKmeans(dataMat3, 3) print(centList)